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X11 - The X.Org project provides an open source implementation of the X Window System.

VoiceOver Utility - VoiceOver describes aloud what appears on your computer screen.

Terminal - OS X is built on an industry-standard UNIX foundation.

System Information - System Information provides detailed information about your computer’s hardware, software and network in an easy-to-read layout.

Migration Assistant - Simplifies the process of moving your information to another Mac.

Keychain Access - Securely store all your passwords for websites and applications in a keychain.

Disk Utility - Create, mount, convert, compressed and encrypted disk images, hard drives, DVD.

Console - The Console utility allows you to monitor system logs from a central location.

ColorSync Utility - ColorSync is the built-in colour management system in OS X.

Boot Camp Assistant

Bluetooth File Exchange - Makes it easy to share files between your Mac and Bluetooth-enabled devices.

AirPort Utility - Note: Most recent release available only within OS X 10.11 El Capitan update.

Adobe Flash Player Install Manager

Activity Monitor - Displays information about all the processes running on your Mac.

Toast Titanium - Toast Titanium is an all-in-one CD/DVD burning suite.

FM Web Publishing

Yummy FTP - FTP + SFTP + FTPS file transfer client which focuses on speed...

VueScan - Scanning program that works with most high-quality flatbed and film scanners to produce scans that have excellent color fidelity and color balance.

Thunderbird - Strong desktop email client with superior speed and responsiveness time.

Telegram - A desktop messenger that allows using the services of Telegram.

TeamViewer - Access your computer while traveling and share your screen for remote support.

Skim by the Skim Team - Easily view, edit, or annotate miscellaneous PDF files.

Uninstaller - It allows you to uninstall applications or find changes made in disk or folder.

takeOverSearchAssetsMac

SearchProtect

PrivateTunnel - Protect your privacy while browsing the web from your Mac.

PDFLab - Split and join PDF documents as well as insert images and blank pages.

PDF Toolkit + - Merges, splits, extracts pages, convert to images and compresses PDFs.

PDF Reader X - Read, annotate, share, and convert your PDF documents.

Opera - Alternative Web browser with server-side compression for slow connections.

Numbers - Plan a wedding. Save for retirement. Track your workouts.

Nuance PDF Converter for Mac - Enables you to convert any PDF file to dozens of text formats.

MailTab for Gmail - MailTab Pro for Gmail is the ideal app for instantly accessing your Gmail account without having to open your Web browser.

iMovie - Edit your clips into a movie with soundtrack and themes.

Folx GO - Easily manage your download tasks from your computer.

Content Transfer - Content Transfer provides an easy way to transfer files to the Walkman player.

Cloud App - CloudApp offers the fastest way to capture and immediately share files.

Chanalyzer - It combines the power of your built-in wireless NIC with a spectrum analyzer.

App for Facebook - This application lets you check your Facebook profile from your Menu Bar.

AirParrot - AirParrot 2 uses AirPlay to mirror your Mac's screen to Apple TV, wirelessly.

XBMC - XBMC is a great Home Theater PC application for the Mac.

µTorrent (uTorrent) - A (very) tiny BitTorrent client.

VLC media player - Watch your favorite movies and listen to your music from one app.

Script Editor

Digital Color Meter

Transmission - Fast, easy, and free multi-platform BitTorrent client.