dfu-programmer is a multi-platform command-line programmer for Atmel (8051, AVR, XMEGA & AVR32) chips with a USB bootloader supporting ISP. Most Atmel devices having a USB port come pre-programmed with the bootloader, and this is a lightweight alternative to Atmel's own FLIP/BatchISP program. This is a mostly Device Firmware Update (DFU) 1.0 compliant user-space application.
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