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iShutDown - Automatically sleep/shut down/restart your Mac with a countdown timer.

iBooks - Amazing way to download and read books.

witchdaemon

VLC media player - Watch your favorite movies and listen to your music from one app.

X11 - The X.Org project provides an open source implementation of the X Window System.

VoiceOver Utility - VoiceOver describes aloud what appears on your computer screen.

Terminal - OS X is built on an industry-standard UNIX foundation.

System Information - System Information provides detailed information about your computer’s hardware, software and network in an easy-to-read layout.

Migration Assistant - Simplifies the process of moving your information to another Mac.

Keychain Access - Securely store all your passwords for websites and applications in a keychain.

Grapher - Graph equations and data sets, and visualise the results on your Mac.

Grab - Take a picture of all or part of your computer screen.

Disk Utility - Create, mount, convert, compressed and encrypted disk images, hard drives, DVD.

DigitalColor Meter - DigitalColor Meter shows you the colour value of any pixel on the screen.

Console - The Console utility allows you to monitor system logs from a central location.

ColorSync Utility - ColorSync is the built-in colour management system in OS X.

Boot Camp Assistant

Bluetooth File Exchange - Makes it easy to share files between your Mac and Bluetooth-enabled devices.

Audio MIDI Setup - Control settings for all audio going into and out of your Mac.

AppleScript Editor - AppleScript is a powerful and versatile scripting language built into OS X.

AirPort Utility - Note: Most recent release available only within OS X 10.11 El Capitan update.

Adobe Flash Player Install Manager

Adobe AIR Uninstaller

Adobe AIR - Cross-operating system runtime that allows Web application developers to use their existing Web development skills (HTML...

Activity Monitor - Displays information about all the processes running on your Mac.

TunnelBear - Browse the web anonymously and block website trackers.

TotalFinder - This app is a plugin for Finder that offers you various helpful features.

Time Machine - Works with an external hard drive to automatically back up your entire Mac.

The Unarchiver - The Unarchiver is an application for Mac to manage your archive files.

TextEdit - Easy-to-use word processor built into OS X.

System Preferences - Do everything from setting a desktop picture to adding a printer and more.

Stickies - Stickies displays your notes and messages on your desktop.

Reminders - Organise your life on your Mac. Make as many to-do lists as you need and easily add to them.

QuickTime Player - A universal media player developed specifically for Mac OS X by Apple, Inc.

Preview - A simple, elegant application for viewing and working with PDF documents.

PhotoSync - wirelessly transfers your photos an... - PhotoSync will transform your photo handling forever.

Photo Booth - Take fun snapshots and make short videos in Photo Booth.

Notes by Apple Inc. - Notes is an application created to make quick records.

Mission Control - Gives you a bird’s-eye view of everything that’s running on your system.

Messages - iMessage lets you send messages to anyone on a Mac, or an iPhone, iPad, or iPod touch running iOS 5.

Mac Informer - Easily update apps from App Store and other sources.

LaunchPad by Apple Inc. - Launchpad makes hunting through an applications folder a thing of the past.

Dictionary - Dictionary is an application included in Mac OS X.

Dashboard - Full-screen app that’s home to widgets: mini-applications that let you perform common tasks and provide you with fast access to information.

ClipMenu - ClipMenu is a simple-to-use clipboard management tool.

Chess - Chess is the best chess and real simulator game for OS X.

Calendar by Apple Inc. - Keep track of your busy schedule and share it with others using Calendar.