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Biological Ontology

Software

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Protege

Stanford Center for Biomedical Informatics Research

Protégé is a free, open-source platform that provides a growing...

based applications with ontologies...and manipulation of ontologies in various representation

Vogon

free

jdamerow

Vogon is a Ontology-based text annotation tool for creating relations between terms in a text...

Vogon is a Ontology-based text...as RDF triples. Ontology is the philosophical

OBO-Edit

free

John Day Ricther

OBO-Edit is an open source ontology editor written in Java. OBO-Edit features an easy to use editing...

an open source ontology...writing ontologies in the OBO biological ontology

OLS Dialog

free

Proteomics Developers

OLS Dialog is a Java front end to the Ontology Lookup Service allowing...

end to the Ontology Lookup Service allowing...extensive list of biomedical ontologies. OLS Dialog

Genotech

free

Ahmad Jamil

Genotech is an open source scientific software developed in JAVA for modeling complex...

JAVA for modeling complex biological regulatory networks

GO-Elite

free

Alexander C. Zambon

GO-Elite is designed to identify a minimal non-redundant set of biological Ontology terms or pathways...

set of biological Ontology...Default resources include multiple ontologies (Gene

SBML Harvester

free

BioSimConnector Team

The SBML Harvester creates a complex ontology-based representation of SBML models...

Harvester creates a complex ontology-based representation...models and biomedical ontologies

Online Spectra Viewer

free

Max Ulbrich

Online Spectra Viewer is a little program that makes it easy to view and compare...

proteins and dyes for biological applications

Loupe Browser

free

10x Genomics

Loupe Browser is a powerful visualization software that provides...

anyone to uncover biological insights...to deepen your biological understanding. You can

MemoFinder

free

Bartek Wilczynski and Milosz Darzynkiewicz

MeMoFinder is a software helping researchers in the task of finding motifs in biological sequences using...

of finding motifs in biological sequences using a consensus approach

dnaTools Xplorer

free

dnaTools, Inc.

dnaTools Xplorer provides you a simple interface for analyzing complex biological...

interface for analyzing complex biological data such as genetic

Gene Ontology

Gene Ontology Team

Bibliosphere Analysis Kit

Genomatix Software

BiblioSphere offers a unique combination of literature-mining and pathway analysis for molecular biologists...

biological networks in different biological contexts. Use BiblioSphere to extend biological

Biological Ontology

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