View a graphic comparison of protein expression between samples. Scaffold displays a complete, experiment-wide view of the proteins identified in a tandem mass spectrometry experiment.
The side-by-side display of all the samples allows you to understand which proteins are differentially expressed. Protein identification results are displayed as probability scores, allowing you to balance the number of proteins and the confidence level of each identification. Automatic annotation of the proteins aids you in interpreting the biological relevance of your data.