inGAP 3.1 beta

Refine short read alignment and detect large-size structural variations.

inGAP-sv is a structural variation detection and visualization app. The tool can refine short-read alignment by re-aligning short reads around a putative SV.

In addition, it can detect large-size structural variations using paired-end sequencing reads. Further, it allows you to visualize SAM-formatted alignments and SVs.