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Protein Databases

Software

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MegAlign

450

DNASTAR

Lasergene’s MegAlign offers both DNA and protein sequence alignment using a range of pairwise and multiple alignment...

offers both DNA and protein sequence alignment using a range

Geneious

Biomatters Ltd

Geneious combines all the major DNA and protein sequence...

the major DNA and protein sequence

Jalview

free

University of Dundee

Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages...

server and the Pfam protein domain database)

MarvinSpace

ChemAxon Ltd

MarvinSpace - High performance 3D molecule visualization tool. MarvinSpace opens...

can retrieve protein structures connecting to the PDB database

coot

free

Paul Emsley

Coot is a Crystallographic Object-Oriented Toolkit. Coot is for macromolecular model building, model completion...

validation, particularly suitable for protein modelling using X-ray

Sequence Analysis

free

Informagen, Inc.

Sequence Analysis is sequence editing, reverse complement, protein translation...

sequence editing, reverse complement, protein translation, ORF finding, secondary

DNActions

free

Nacho Erquiaga

DNActions is a Mac OS X widget that can be used to perform common actions on DNA sequences...

of a DNA sequence, the protein translation in all six

StarORF

free

STAR Project

StarORF is a tool that facilitates the identification of the protein(s) encoded in DNA sequences...

the identification of the protein(s) encoded...see putative ORF protein sequence (longer

GeneStudio

free

Nikolay Rovinskiy

Gene Studio is a software app for the design...

the molecular weight of a protein. It can

AltAnalyze

free

Nathan Salomonis and Bruce Conklin

AltAnalyze is an easy-to-use application for the end-to-end analysis of microarry, single-cell (ICGS)...

and novel) expression along protein isoforms, domain composition

PRIDE Inspector

free

Yasset Perez-Riverol

PRIDE Inspector is a desktop application to visualise and perform first quality...

database experiments. Different views on spectra, chromatogram, protein...both protein and peptide

Points Calculator

free

MeaMod Group.

Weight Watchers Points and ProPoints Calculator for the UK and PointsPlus for the US to assist with Diet and Weight...

system is based on protein, carbohydrates

Metapiga

free

Đorđe Grbić, Michel Milinkovitch

MetaPIGA is a simple-to-use phylogeny inference program that provides great performance...

analysis of binary, nucleotide, protein, and codon

Scaffold3

Proteome Software, Inc.

The side-by-side display of all the samples allows you to understand which proteins...

comparison of protein expression between samples...proteins are differentially expressed. Protein

Scaffold 4

Proteome Software, Inc

This application allows you to visualize and validate complex MS/MS proteomics experiments...

Identifies regulated isoforms and protein PTMs

Biomath Calculators

free

Promega Corporation

The Biomath calculators provide a range of functions essential to molecular biology...

experiments, including DNA and protein conversions, melting temperature

Food Score Calculator

Shroomies LLC

Food Score Calculator is a handy application that lets you quickly...

the fiber, and the protein

Biotechnix 3d X

GENTECH

Biotechnix 3d from Gentech incorporates within a single software package...

composition, DNA to protein...range of 3-D protein viewing options, Biotechnix

ProteinID Finder Lite

Proteome Solutions

ProteinID Finder is a proteomics analyzation software capable of extracting...

from the online universal protein resource database UniProt. ProteinID

Protein Databases

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