Featured 

Multistate Alignment

Software
MegAlign
rating
442
DNASTAR
Lasergene’s MegAlign offers both DNA and protein sequence alignment using a range of pairwise and multiple alignment...
...and protein sequence alignment using a range ...pairwise and multiple alignment methods. Rich graphical...
clustalx
free rating
37
embl
ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins...
...Alignment (MSA) is generally the alignment of ...purpose multiple sequence alignment program for DNA...
Cn3D
free rating
34
NCBI
Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures...
...structure, sequence, and alignment, and now ha ...powerful annotation and alignment editing features...
Alignment for Xcode
free rating
25
Atsushi Kiwaki
Alignment for Xcode is an open source Xcode source editor extension that allows you to align your...
...that allows you to align your assignment statement ...the application window. - Align based on Colon.
raxmlGUI
free rating
4
Silvestro, D. and Michalak, I.
raxmlGUI is a userfriendly graphical front-end for phylogenetic analyses using RAxML...
...binary, and multistate alignments. - Automatic ...Combining multiple alignments with automatic...
MAFFT
free rating
4
Kazutaka Katoh
MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple...
...multiple sequence alignment program for unix ...alignment methods, L-INS-i (accurate; for alignment of...
GLoQ-Net
free rating
4
Nicola Ferraro
GLoQNet is a framework for the alignment of protein to protein interaction (PPI) networks. It performs global...
...It performs global alignment, local alignment, and network ...Global-Local Alignment and Querying of...
AliView
free rating
2
Anders Larsson
AliView is a free alignment viewer and editor for Mac. Main features: - define aligner program presets (different parameters...
...features: - define aligner program presets (different ...different software). - align new sequences to...
prankster
free rating
1
Ari Loytynoja
PRANKSTER is a graphical front-end to the multiple sequence alignment program PRANK. It supports the input and output...
...the multiple sequence alignment program PRANK ...of multiple different alignment formats, printing to...
SQUINT
rating
7
SATe
free rating
1
Jiaye Yu, Mark Holder, Jeet Sukumaran, Siavash Mirarab, and Jamie Oaks
SATé is a software package for inferring a sequence alignment and phylogenetic tree. The iterative algorithm involves...
...inferring a sequence alignment and phylogenetic tree ...algorithm involves repeated alignment and tree...
Squint
free rating
1
The University of Auckland
Squint is an advanced alignment tool. It brings together algorithmic alignment...
...brings together algorithmic alignment of molecular ...Import/export sequence/alignment data in a...
4Sale
free rating
1
Philipp Seibel
SALE is a tool for synchronous RNA sequence and secondary structure alignment. The application...
...and secondary structure alignment. The application allow ...manual editing of aligned sequences and...
Alignment Explorer
rating Sape Research Group