Featured

Multistate Alignment

Software

Relevance Popularity Rating

MegAlign

442

DNASTAR

Lasergene’s MegAlign offers both DNA and protein sequence alignment using a range of pairwise and multiple alignment...

...and protein sequence alignment using a range ...pairwise and multiple alignment methods. Rich graphical...

clustalx

free

embl

ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins...

...Alignment (MSA) is generally the alignment of ...purpose multiple sequence alignment program for DNA...

Cn3D

free

NCBI

Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures...

...structure, sequence, and alignment, and now ha ...powerful annotation and alignment editing features...

Alignment for Xcode

free

Atsushi Kiwaki

Alignment for Xcode is an open source Xcode source editor extension that allows you to align your...

...that allows you to align your assignment statement ...the application window. - Align based on Colon.

raxmlGUI

free

Silvestro, D. and Michalak, I.

raxmlGUI is a userfriendly graphical front-end for phylogenetic analyses using RAxML...

...binary, and multistate alignments. - Automatic ...Combining multiple alignments with automatic...

MAFFT

free

Kazutaka Katoh

MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple...

...multiple sequence alignment program for unix ...alignment methods, L-INS-i (accurate; for alignment of...

GLoQ-Net

free

Nicola Ferraro

GLoQNet is a framework for the alignment of protein to protein interaction (PPI) networks. It performs global...

...It performs global alignment, local alignment, and network ...Global-Local Alignment and Querying of...

AliView

free

Anders Larsson

AliView is a free alignment viewer and editor for Mac. Main features: - define aligner program presets (different parameters...

...features: - define aligner program presets (different ...different software). - align new sequences to...

prankster

free

Ari Loytynoja

PRANKSTER is a graphical front-end to the multiple sequence alignment program PRANK. It supports the input and output...

...the multiple sequence alignment program PRANK ...of multiple different alignment formats, printing to...

SQUINT

SATe

free

Jiaye Yu, Mark Holder, Jeet Sukumaran, Siavash Mirarab, and Jamie Oaks

SATé is a software package for inferring a sequence alignment and phylogenetic tree. The iterative algorithm involves...

...inferring a sequence alignment and phylogenetic tree ...algorithm involves repeated alignment and tree...

Squint

free

The University of Auckland

Squint is an advanced alignment tool. It brings together algorithmic alignment...

...brings together algorithmic alignment of molecular ...Import/export sequence/alignment data in a...

4Sale

free

Philipp Seibel

SALE is a tool for synchronous RNA sequence and secondary structure alignment. The application...

...and secondary structure alignment. The application allow ...manual editing of aligned sequences and...

Alignment Explorer

Sape Research Group

Additional Alignment Plug-in

CLC bio

Multistate Alignment

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