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multistate alignment
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Multistate Alignment
Software
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MegAlign
450
DNASTAR
Lasergene’s MegAlign offers both DNA and protein sequence alignment using a range of pairwise and multiple alignment...
and protein sequence
alignment
using a range...pairwise and multiple
alignment
methods. Rich graphical
Jalview
free
90
University of Dundee
Jalview is a multiple alignment editor written in Java. It is used widely in a variety of web pages...
is a multiple
alignment
...as a general purpose
alignment
editor. Jalview Development
Alignment for Xcode
free
66
Atsushi Kiwaki
Alignment for Xcode is an open source Xcode source editor extension that allows you to align...
that allows you to
align
your assignment...the application window.
Align
based on Colon
clustalx
free
44
embl
ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins...
Alignment
(MSA) is generally the
alignment
...purpose multiple sequence
alignment
program
Cn3D
free
39
NCBI
Cn3D is a helper application for your web browser that allows you to view 3...
structure, sequence, and
alignment
...powerful annotation and
alignment
editing
MEGA 5
free
18
Koikiro Temura,Daniel Peterson,Glen Stetcher
MEGA is an integrated tool for conducting automatic and manual alignment...
and manual
alignment
, inferring phylogenetic...data, sequence
alignments
, inferred phylogenetic
AliView
free
9
Anders Larsson
AliView is a free alignment viewer and editor for Mac. Main features: - define aligner program presets (different parameters...
features: - define
aligner
program presets...different software).
align
new sequences
raxmlGUI
free
8
Silvestro, D. and Michalak, I.
raxmlGUI is a userfriendly graphical front-end for phylogenetic analyses using RAxML...
binary, and
multistate
alignments
. Automatic...Combining multiple
alignments
with automatic
MAFFT
free
4
Kazutaka Katoh
MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple...
multiple sequence
alignment
program for unix...
alignment
methods, L-INS-i (accurate; for
alignment
ColliderScribe
4
Astute Graphics Limited
Additionaly be inspired by the Space Fill panel which allows you to fill single or multiple...
COLLIDERSCRIBE allows you to
align
shapes with speed...Made up of three
alignment
tools that use clear
inGAP
free
4
inGAP Team
inGAP-sv is a structural variation detection and visualization app. The tool can refine short...
refine short-read
alignment
by re-
aligning
...visualize SAM-formatted
alignments
GLoQ-Net
free
4
Nicola Ferraro
GLoQNet is a framework for the alignment of protein to protein interaction (PPI) networks. It performs global...
It performs global
alignment
, local
alignment
, and network...Global-Local
Alignment
and Querying
MA 1 - Automatic Monitor Alignment
2
com.neumann
SQUINT
7
prankster
free
1
Ari Loytynoja
PRANKSTER is a graphical front-end to the multiple sequence alignment program PRANK. It supports the input and output...
the multiple sequence
alignment
program PRANK...of multiple different
alignment
formats, printing
SATe
free
1
Jiaye Yu, Mark Holder, Jeet Sukumaran, Siavash Mirarab, and Jamie Oaks
SATé is a software package for inferring a sequence alignment and phylogenetic tree. The iterative algorithm...
inferring a sequence
alignment
and phylogenetic...algorithm involves repeated
alignment
Squint
free
1
The University of Auckland
Squint is an advanced alignment tool. It brings together algorithmic alignment...
brings together algorithmic
alignment
of molecular...Import/export sequence/
alignment
4Sale
free
1
Philipp Seibel
SALE is a tool for synchronous RNA sequence and secondary structure alignment. The application...
and secondary structure
alignment
. The application...manual editing of
aligned
sequences
Alignment Explorer
Sape Research Group
Additional Alignment Plug-in
CLC bio
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Tags
Alignment
Alignment Editor
Displays
DNA
Paired-end Sequencing Reads
Phylogenetic Tree
Protein
SAM-formatted Alignment
Sequence
Sequence Alignment